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LinkDensities()
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Calculate Link Community Link Densities |
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corLinkcommCentrality()
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Correlation of Community Centrality with Classic Centrality |
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cutDendrogramAt()
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Extract Meta-Communities |
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edge.duplicates()
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Find and Remove Edge Loops and Duplicates |
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get.community.overlaps()
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Find Node Overlaps between Communities |
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get.shared.nodes()
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Get Nodes Shared by Communities |
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getAllNestedComm()
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Find Nested Communities |
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getClusterRelatedness()
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Hierarchichal Clustering of Link Communities |
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getCommunityCentrality()
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Calculate Community Centrality Measures for Nodes |
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getCommunityConnectedness()
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Calculate Community Connectedness or Modularity |
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getCommunityMatrix()
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Construct a Community Membership Matrix |
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getEdgesIn()
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Extract Edge Indices from Communities |
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getLinkCommunities()
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Extract Link Communities from a Network |
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getNestedHierarchies()
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Find Nested Structures in Communities |
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getNodesIn()
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Extract Nodes from Communities |
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getOCG.clusters()
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Generate Overlapping Cluster Generator (OCG) Communities |
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graph.feature()
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Make Node or Edge Graph Features |
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human_pp
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Sample Human Protein Interactome |
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integer.edgelist()
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Convert A Network to an Integer Edgelist |
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karate
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Social Network in a Karate Club |
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layout.spencer.circle()
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Calculate Node Coordinates for a Spencer Circle |
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lesmiserables
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Co-Appearance Network from Les Miserables |
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linkcomm-package
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The linkcomm package |
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linkcomm2clustnsee()
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Write a Partition File for Clust&See |
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linkcomm2cytoscape()
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Write an Edge Attribute File for Cytoscape |
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meta.communities()
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Produce a Set of Meta-Communities |
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newLinkCommsAt()
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User-Defined Link Communities |
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numberEdgesIn()
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Extract Node Community Membership by Edges |
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orderCommunities()
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Order Link Communities According to the Dendrogram |
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plot(<OCG>)
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The OCG Plotting Function |
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plot(<linkcomm>)
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The linkcomm Plotting Function |
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plotLinkCommDend()
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Plot a Coloured Dendrogram of Link Communities |
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plotLinkCommGraph()
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Plot a Graph Layout of Link Communities |
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plotLinkCommMembers()
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Plot a Community Membership Matrix for Link Communities |
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plotLinkCommSumm()
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Plot a Summary of the Link Community Algorithm Output |
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plotLinkCommSummComm()
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Plot a Summary of the Link Communities |
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plotOCGraph()
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Plot a Graph Layout of OCG Communities |
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pp_rnapol
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Sample Yeast Protein Interactome |
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print(<OCG>)
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Print a Summary of an OCG Object |
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print(<linkcomm>)
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Print a Summary of a linkcomm Object |
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read.OCG()
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Read an OCG Partition File into R |
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weighted
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Sample Gene Co-Expression Network |
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which.communities()
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Extract Community Membership for Nodes |